Project Application Details

ARCHIE Project title: 30TB
Project PI: 161 Cathedral Street
Department: 2021-01-20
Address: 161 Cathedral Street, , user supplied code, G4 0RE
Relevant industrial collaborations:
Existing relevant KTP activities:
Does the PI require to run calculations? 10
Number of users involved in the project: Three years
User 1 details:

Dr Leighton Pritchard
leighton.pritchard@strath.ac.uk
kbb19189
SIPBS, University of Strathclyde
+44 (0)141 548 4962
Chancellor’s Fellow (Lecturer)

User 2 details:

To Be Determined
Postdoctoral Position currently being recruited

Service level requested:
ARCHIE Project description: 30TB
Potential output of the project:

– Publications/conference presentations describing pyani and PDP software (JOSS, PeerJ, etc.)
– Publications/conference presentations describing application of ANI to bacterial taxa (J Bact, Microbiology, etc.)
– Publications/conference presentations describing application of PDP to bacterial taxa (J Bact, Microbiology, etc.)
– Publications/conference presentations describing genomeRxiv (JOSS, PeerJ, eLife, etc.)
– genomeRxiv service (hosted through Virginia Tech) – KE
– novel diagnostic primer sets (potential commercialisation)

Project start date: 2021-01-20
Duration of the project: Three years
Total CPU time required (in hours): 1,500,000
CPU hours required by typical job: 10
Approximate amount of data created per job (in GB):
Approximate amount of data created per project: 30TB
Funding Agency Grant Reference No: BB/V010417/1
pFact ID:
RKES ID:
Software required for the project: user supplied code
Software required to be installed for the project: pyani: https://github.com/widdowquinn/pyani/tree/version_0_2
Experience in using software package 1: 10
Software required to be installed for the project: pdp: https://github.com/widdowquinn/find_differential_primers/tree/master
Experience in using software package 2: 10
Software required to be installed for the project:
Experience in using software package 3: 1
Training required:
Other training required:
Experience in using HPC: 7